AUTHOR=Céspedes Sandra , Saitz Waleska , Del Canto Felipe , De la Fuente Marjorie , Quera Rodrigo , Hermoso Marcela , Muñoz Rául , Ginard Daniel , Khorrami Sam , Girón Jorge , Assar Rodrigo , Rosselló-Mora Ramón , Vidal Roberto M. 

TITLE=Genetic Diversity and Virulence Determinants of Escherichia coli Strains Isolated from Patients with Crohn's Disease in Spain and Chile

JOURNAL=Frontiers in Microbiology

VOLUME=8

YEAR=2017

URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2017.00639

DOI=10.3389/fmicb.2017.00639

ISSN=1664-302X

ABSTRACT=<p>Adherent-invasive <italic>Escherichia coli</italic> (AIEC) strains are genetically variable and virulence factors for AIEC are non-specific. FimH is the most studied pathogenicity-related protein, and there have been few studies on other proteins, such as Serine Protease Autotransporters of <italic>Enterobacteriacea</italic> (SPATEs). The goal of this study is to characterize <italic>E. coli</italic> strains isolated from patients with Crohn's disease (CD) in Chile and Spain, and identify genetic differences between strains associated with virulence markers and clonality. We characterized virulence factors and genetic variability by pulse field electrophoresis (PFGE) in 50 <italic>E. coli</italic> strains isolated from Chilean and Spanish patients with CD, and also determined which of these strains presented an AIEC phenotype. Twenty-six <italic>E. coli</italic> strains from control patients were also included. PFGE patterns were heterogeneous and we also observed a highly diverse profile of virulence genes among all <italic>E. coli</italic> strains obtained from patients with CD, including those strains defined as AIEC. Two iron transporter genes <italic>chuA</italic>, and <italic>irp2</italic>, were detected in various combinations in 68–84% of CD strains. We found that the most significant individual <italic>E. coli</italic> genetic marker associated with CD <italic>E. coli</italic> strains was <italic>chuA</italic>. In addition, patho-adaptative <italic>fimH</italic> mutations were absent in some of the highly adherent and invasive strains. The <italic>fimH</italic> adhesin, the iron transporter <italic>irp2</italic>, and Class-2 SPATEs did not show a significant association with CD strains. The V27A <italic>fimH</italic> mutation was detected in the most CD strains. This study highlights the genetic variability of <italic>E. coli</italic> CD strains from two distinct geographic origins, most of them affiliated with the B2 or D <italic>E. coli</italic> phylogroups and also reveals that nearly 40% of Chilean and Spanish CD patients are colonized with <italic>E.coli</italic> with a characteristic AIEC phenotype.</p>