Original Research

Published on 28 Mar 2024

Identification and characterization of the critical genes encoding Cd-induced enhancement of SOD isozymes activities in Zhe-Maidong (Ophiopogon japonicus)

in Plant Bioinformatics

Ruijun Hou
Zhihui Wang
Qian Zhu
Jie Wang
Yifeng Zhou
Ye Li
Huijun Liu
Qian Zhao
Jun Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1355849

575 views

Original Research

Published on 27 Mar 2024

Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome of Eucalyptus camaldulensis

in Plant Bioinformatics

Yoshinori Fukasawa
Patrick Driguez
Salim Bougouffa
Karen Carty
Alexander Putra
Ming-Sin Cheung
Luca Ermini

Frontiers in Plant Science

doi 10.3389/fpls.2024.1339594

634 views

Original Research

Published on 26 Mar 2024

Genome wide characterization and expression analysis of CrRLK1L gene family in wheat unravels their roles in development and stress-specific responses

in Plant Bioinformatics

Nilesh D. Gawande
Subramanian Sankaranarayanan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1345774

908 views

Original Research

Published on 21 Mar 2024

Genome-wide association study and genomic prediction for resistance to brown planthopper in rice

in Plant Bioinformatics

Cong Zhou
Weihua Jiang
Jianping Guo
Lili Zhu
Lijiang Liu
Shengyi Liu
Rongzhi Chen
Bo Du
Jin Huang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1373081

892 views

Original Research

Published on 21 Mar 2024

Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant

in Plant Bioinformatics

Maria Borowska-Beszta
Magdalena Smoktunowicz
Daria Horoszkiewicz
Joanna Jonca
Michal Mateusz Waleron
Jan Gawor
Adriana Mika
Tomasz Sledzinski
Krzysztof Waleron
Malgorzata Waleron

Frontiers in Plant Science

doi 10.3389/fpls.2024.1352318

1,191 views
1 citation

Methods

Published on 20 Mar 2024

A new model construction based on the knowledge graph for mining elite polyphenotype genes in crops

in Plant Bioinformatics

Dandan Zhang
Ruixue Zhao
Guojian Xian
Yuantao Kou
Weilu Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1361716

829 views

Original Research

Published on 19 Mar 2024

A comprehensive evaluation of the potential of three next-generation short-read-based plant pan-genome construction strategies for the identification of novel non-reference sequence

in Plant Bioinformatics

Meiye Jiang
Meili Chen
Jingyao Zeng
Zhenglin Du
Jingfa Xiao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1371222

755 views

Methods

Published on 19 Mar 2024

Identification of plant microRNAs using convolutional neural network

in Plant Bioinformatics

Yun Zhang
Jianghua Huang
Feixiang Xie
Qian Huang
Hongguan Jiao
Wenbo Cheng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1330854

763 views

Original Research

Published on 18 Mar 2024

Combined miRNA and mRNA sequencing reveals the defensive strategies of resistant YHY15 rice against differentially virulent brown planthoppers

in Plant Bioinformatics

Bin Yu
Mengjia Geng
Yu Xue
Qingqing Yu
Bojie Lu
Miao Liu
Yuhan Shao
Chenxi Li
Jingang Xu
Jintao Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1366515

959 views

Methods

Published on 14 Mar 2024

LocoGSE, a sequence-based genome size estimator for plants

in Plant Bioinformatics

Pierre Guenzi-Tiberi
Benjamin Istace
Inger Greve Alsos
The PhyloNorway Consortium
Eric Coissac
Sébastien Lavergne
The PhyloAlps Consortium
Jean-Marc Aury
France Denoeud
L.G. Alsos

Frontiers in Plant Science

doi 10.3389/fpls.2024.1328966

1,265 views

Original Research

Published on 11 Mar 2024

Transcriptome and co-expression network revealed molecular mechanism underlying selenium response of foxtail millet (Setaria italica)

in Plant Bioinformatics

Yinyuan Wen
Liuna Cheng
Zeya Zhao
Mengyao An
Shixue Zhou
Juan Zhao
Shuqi Dong
Xiangyang Yuan
Meiqiang Yin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1355518

1,030 views

Original Research

Published on 08 Mar 2024

Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved

in Plant Bioinformatics

Zeping Cai
Yinuo Dai
Xia Jin
Hui Xu
Zhen Huang
Zhenyu Xie
Xudong Yu
Jiajia Luo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1348295

919 views

Original Research

Published on 08 Mar 2024

A chromosome-level genome assembly of Solanum chilense, a tomato wild relative associated with resistance to salinity and drought

in Plant Bioinformatics

Corentin Molitor
Tomasz J. Kurowski
Pedro M. Fidalgo de Almeida
Zoltan Kevei
Daniel J. Spindlow
Steffimol R. Chacko Kaitholil
Justice U. Iheanyichi
H. C. Prasanna
Andrew J. Thompson
Fady R. Mohareb

Frontiers in Plant Science

doi 10.3389/fpls.2024.1342739

1,791 views

Original Research

Published on 08 Mar 2024

Aphid gene expression following polerovirus acquisition is host species dependent

in Plant Bioinformatics

Sudeep Pandey
Michael Catto
Phillip Roberts
Sudeep Bag
Alana L. Jacobson
Rajagopalbabu Srinivasan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1341781

1,457 views

Original Research

Published on 07 Mar 2024

Full-length transcriptome sequencing provides insights into alternative splicing under cold stress in peanut

in Plant Bioinformatics

Xin Wang
Yue Liu
Lei Ouyang
Ruonan Yao
Tingting Yu
Liying Yan
Yuning Chen
Dongxin Huai
Xiaojing Zhou
Zhihui Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1362277

934 views

Original Research

Published on 06 Mar 2024

High-throughput UAV-based rice panicle detection and genetic mapping of heading-date-related traits

in Plant Bioinformatics

Rulei Chen
Hengyun Lu
Yongchun Wang
Qilin Tian
Congcong Zhou
Ahong Wang
Qi Feng
Songfu Gong
Qiang Zhao
Bin Han

Frontiers in Plant Science

doi 10.3389/fpls.2024.1327507

1,414 views

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Articles

Identification and characterization of the critical genes encoding Cd-induced enhancement of SOD isozymes activities in Zhe-Maidong (Ophiopogon japonicus)

Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome of Eucalyptus camaldulensis

Genome wide characterization and expression analysis of CrRLK1L gene family in wheat unravels their roles in development and stress-specific responses

Genome-wide association study and genomic prediction for resistance to brown planthopper in rice

Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant

A new model construction based on the knowledge graph for mining elite polyphenotype genes in crops

A comprehensive evaluation of the potential of three next-generation short-read-based plant pan-genome construction strategies for the identification of novel non-reference sequence

Identification of plant microRNAs using convolutional neural network

Combined miRNA and mRNA sequencing reveals the defensive strategies of resistant YHY15 rice against differentially virulent brown planthoppers

LocoGSE, a sequence-based genome size estimator for plants

Transcriptome and co-expression network revealed molecular mechanism underlying selenium response of foxtail millet (Setaria italica)

Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved

A chromosome-level genome assembly of Solanum chilense, a tomato wild relative associated with resistance to salinity and drought

Aphid gene expression following polerovirus acquisition is host species dependent

Full-length transcriptome sequencing provides insights into alternative splicing under cold stress in peanut

High-throughput UAV-based rice panicle detection and genetic mapping of heading-date-related traits