Papers of the Conference on Genetics of Aging and Longevity 2012

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Perspective
03 March 2014
Signaling pathway cloud regulation for in silico screening and ranking of the potential geroprotective drugs
Alex Zhavoronkov
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Alexey A. Moskalev
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The major challenges of aging research include absence of the comprehensive set of aging biomarkers, the time it takes to evaluate the effects of various interventions on longevity in humans and the difficulty extrapolating the results from model organisms to humans. To address these challenges we propose the in silico method for screening and ranking the possible geroprotectors followed by the high-throughput in vivo and in vitro validation. The proposed method evaluates the changes in the collection of activated or suppressed signaling pathways involved in aging and longevity, termed signaling pathway cloud, constructed using the gene expression data and epigenetic profiles of young and old patients' tissues. The possible interventions are selected and rated according to their ability to regulate age-related changes and minimize differences in the signaling pathway cloud. While many algorithmic solutions to simulating the induction of the old into young metabolic profiles in silico are possible, this flexible and scalable approach may potentially be used to predict the efficacy of the many drugs that may extend human longevity before conducting pre-clinical work and expensive clinical trials.

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55 citations
Maladaptive aging theories. Illustration of “Mutation Accumulation Theory.” Here the probability of an individual being dead (P(dead), red) increases over time solely due to harsh extrinsic mortality. Consequently the likelihood of successful reproduction (P(reproduction)) at any given time decreases over time (blue). The increasing probability of being dead acts as the main force restricting the selection for longer lifespan. It is reasonable to assume that there is no selective pressure for longevity after a certain threshold at which the likelihood of reproducing is very low. In this case the fitness associated with extended lifespan is neutral. Here death is supposed to occur before senescence has an effect, thus senescence is not necessary to affect the probability of death. M, maturity.
20,338 views
41 citations
20,910 views
118 citations
Mini Review
19 December 2012
Mechanisms and roles of mitophagy. (A) In yeast Atg32 (blue), a mitochondrial outer membrane protein, interacts with Atg8 (red) directly or indirectly through the adaptor protein Atg11 (green), and links mitochondria to autophagic machinery. (B) During red blood cell development the mitochondrial population is eliminated by mitophagy. Nix (blue), an outer mitochondrial membrane protein, serves as a receptor for targeting mitochondria to autophagosomes through its interaction with the autophagosomal protein LC3 (red). (C) In the fertilized C. elegans embryo, the autophagic pathway selectively degrades sperm-derived mitochondria (blue; oocyte-derived mitochondria are shown in pink). (D) Upon mitochondrial depolarization, PINK1 (green) is stabilized on the outer mitochondrial membrane. Subsequently, Parkin (blue) is recruited and ubiquitylates outer mitochondrial membrane proteins such as MFN1/2 and VDAC1. (1) Ubiquitinated MFN1/2 is degraded by the proteasome system. Damaged mitochondria are isolated and cannot fuse with the healthy mitochondrial population. (2) Next, ubiquitin-binding adaptor molecules, such as p62 (black), are recruited to mitochondria to initiate mitophagy through their interaction with LC3 (red).
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110 citations
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